• Introduction:
Home Statistics
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  • Data source:
Ensembl (49_36k) UCSC (hg18) UniProt (9.4) KEGG (0.6.1) BIND MINT OMIM (20070110) Pfam (20061106) DAS-CBS TreeFam
  • Other:
Supplementary Table 1-3
in the article "DNA copy
number aberrations in
breast cancer studied by
array Comparative
Genomic Hybridization"
in the journal of
Genomics, Proteomics &
Bioinformatics.

The deposited data
for the paper "An
improved method for
genome wide DNA
methylation
profiling correlated
to transcription and
genomic instability
in two breast cancer
cell lines"
published in BMC
Genomics


















INTRODUCTION

 

Snap is a sequence analysis tool providing a simple but detailed analysis of human genes and their variations. For each gene, a gene-gene relationship network can be generated based on protein-protein interaction data, metabolic pathway connections and extended through phylogenetic relations.

 

Snap provides tools for designing sequence primers and evaluating RNA splicing effects of single SNPs - known from the databases or defined by you. Primers can be designed for the amplification or sequencing of cDNA, genomic DNA, introns only or exons only.

 

Reference: Li, S., Ma, L., Li, H., Vang, S., Hu, Y., Bolund, L., Wang, J. "Snap: an integrated SNP annotation platform." Nucleic Acids Res. 2007 Jan 1; vol: 35 (Database issue): D707-10 (NAR pdf tables)

 

Snap v3.4 released - 2008-07-07
Update according to Ensembl (49_36k)

Snap v3.2 released - 2007-01-29
Ability to change sequence numbering from genomic to coding
Added sequence toolbox for simple sequence manipulation

 

E-mail: snap@humgen.au.dk; snap@genomics.org.cn

Main site in Denmark at http://snap.humgen.au.dk/
Mirror site in China at http://snap.genomics.org.cn/

 

 

STATISTICS

 

number of genes

22,839

number of transcripts

46,391

number of SNPs

4,236,837

SNPs in coding regions

162,977

non-synonymous SNPs

93,222

protein features

2,135,768

Swiss-Prot

5 types, 39 sub-types

DAS-CBS

2 types, 11 sub-types

non-synonymous SNPs mapped with features

32,841 (40.77%)

relationships between genes

197,467

BIND

67,270

MINT

47,826

KEGG

2,120

TreeFam

80,251